http://web.mit.edu/~r/current/arch/i386_linux26/lib/R/library/simpleaffy/html/00Index.html WebbBioconductor version: 3.9. Provides high level functions for reading Affy .CEL files, phenotypic data, and then computing simple things with it, such as t-tests, fold changes and the like. Makes heavy use of the affy library. Also has some basic scatter plot functions and mechanisms for generating high resolution journal figures...
simpleaffy package - RDocumentation
Webb2 dec. 2024 · ADD REPLY • link 16 months ago Evan 20. 0. As Lori says, this was fixed yesterday. > library (BiocManager) Bioconductor version 3.14 (BiocManager 1.30.16), R 4.1.2 (2024-11-01) > install ("BiocVersion", force = TRUE) Bioconductor version 3.14 (BiocManager 1.30.16), R 4.1.2 (2024-11-01) Installing package (s) 'BiocVersion' trying … WebbSimpleaffy also has a pair of functions for plotting simple heatmaps, \Rfunction{hmap.eset} and \Rfunction{hmap.pc} for AffyBatch and PairComp objects, respectively. theorie over coachen
Bioconductor - simpleaffy
Webb62 lines (54 sloc) 1.86 KB. Raw Blame. %define packname simpleaffy. Summary: Very simple high level analysis of Affymetrix data. Name: R-% {packname} Version: 2.38.0. … WebbStart the R program; on Windows and OS X, this will usually mean double-clicking on the R application, on UNIX-like systems, type “R” at a shell prompt. As a first step with R, start … WebbThe raw data was read with the simpleaffy, normalized and log transformed in batches using gene-chip robust multiarray averaging (GCRMA) and probe level data summarized to gene level expression with custom CDF for affymetrix HG-U133_Plus_2 arrays based on Entrez genes (hgu133ahsentrezgcdf_24.0.0). The normalized expression files were then … théorie orthodoxe